UC-Davis-molecular-computing / ppsim

Python package for simulating population protocols
MIT License
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Import a CRN encoded in SBML format #32

Open EricESeverson opened 3 years ago

EricESeverson commented 3 years ago

SBML is a standard encoding for models of biological processes. http://sbml.org/Main_Page

It supports a lot more features than just a basic CRN, but if something is encoded that is a pure CRN (with 1->1 and 2->2 reations), it should be able to import directly to ppsim.

The following repository has hundreds of real models in the SBML language. https://www.ebi.ac.uk/biomodels/ We should see if any of these examples could be faithfully simulated by ppsim.