Currently transformation does nothing. We should make it smarter, primarily about the antibiotic markers and antibiotics stated. To do this, it would have a library of antibiotic marker orfs and would look for them in the sequence. Could state that it needs to match one within some edit distance. So, this would need JAligner and calceditdistance.
Currently transformation does nothing. We should make it smarter, primarily about the antibiotic markers and antibiotics stated. To do this, it would have a library of antibiotic marker orfs and would look for them in the sequence. Could state that it needs to match one within some edit distance. So, this would need JAligner and calceditdistance.