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UCDenver-ccp / Cartoomics

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Issue with subgraph visualization output #55

Open bsantan opened 9 months ago

bsantan commented 9 months ago

Seeing this error after any subgraph is generated, code cannot advance: File "/Users/brooksantangelo/anaconda3/envs/Cartoomics/lib/python3.11/site-packages/pandas/core/generic.py", line 1844, in _get_label_or_level_values raise KeyError(key) KeyError: 'group'

Issue in ~/Cartoomics/visualize_subgraph.py", line 94, in create_cytoscape_png p4c.set_node_color_mapping(**gen_node_color_map('group', mapping_type='d',style_name='BioPAX_SIF'))

could be due to versioning issue with py4cytoscape?

bsantan commented 8 months ago

Try defining py4cytoscape version