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UCDenver-ccp / DocumentMetadataAPI

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Possible missing document in metadata backend #5

Open bill-baumgartner opened 1 year ago

bill-baumgartner commented 1 year ago

In today's StandUp call, a result was shown in the UI where one of the publications was missing metadata, but had a link to PubMed. I'm wondering if this document (PMID:9548812) is missing from our Document Metadata backend.

@edgargaticaCU - would you mind checking to see if we have metadata on this particular document?

bill-baumgartner commented 1 year ago

Edgar confirmed that this PMID is missing from our backend data store. We will start looking into why it's missing.

bill-baumgartner commented 1 year ago

@edgargaticaCU - it looks like that document should have been part of this batch: pubmed22n0317.xml.gz.ui_metadata.tsv.gz

Do we have any record of that batch being loaded? In case it's helpful, here are a few other PMIDs from that batch: 9542405, 9542408, 9572876

edgargaticaCU commented 1 year ago

@bill-baumgartner I am not seeing those other PMIDs in the database, either, and the filename doesn't appear in the logs for the lambda function endpoint. This implies that it was part of the initial data load rather than the incremental update, so it's possible I missed it. Would it be possible to manually send a request to that endpoint to process this file?