Update 24 packages - Githubissues

UCL-ARC / r-amr-epidemiology

R for Reproducible Scientific Analysis

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:robot: This is an automated build

This will update 24 packages in your lesson with the following versions:

# NEW OR REMOVED PACKAGES -------------------------------
- MASS      [required by car, doBy, ggplot2, and 4 others]
- mgcv      [required by car, ggplot2]
- nnet      [required by car]
- survival  [required by quantreg]
- MASS       [7.3-61 -> *]
- mgcv       [1.9-1 -> *]
- nnet       [7.3-19 -> *]
- survival   [3.7-0 -> *]
- ragg       [1.3.3: unchanged]

# CRAN -----------------------------------------------------------------------
- askpass      [1.2.0 -> 1.2.1]
- commonmark   [1.9.1 -> 1.9.2]
- data.table   [1.16.0 -> 1.16.2]
- doBy         [4.6.22 -> 4.6.24]
- evaluate     [1.0.0 -> 1.0.1]
- fs           [1.6.4 -> 1.6.5]
- gtable       [0.3.5 -> 0.3.6]
- igraph       [2.0.3 -> 2.1.1]
- Matrix       [1.7-0 -> 1.7-1]
- ps           [1.8.0 -> 1.8.1]
- quantreg     [5.98 -> 5.99]
- Rcpp         [1.0.13 -> 1.0.13-1]
- renv         [1.0.9 -> 1.0.11]
- rmarkdown    [2.28 -> 2.29]
- rstudioapi   [0.16.0 -> 0.17.1]
- sys          [3.4.2 -> 3.4.3]
- tinytex      [0.53 -> 0.54]
- withr        [3.0.1 -> 3.0.2]
- xfun         [0.47 -> 0.49]
- xplorerr     [0.1.2 -> 0.2.0]
- MASS         [* -> 7.3-61]
- mgcv         [* -> 1.9-1]
- nnet         [* -> 7.3-19]
- survival     [* -> 3.7-0]

:stopwatch: In a few minutes, a comment will appear that will show you how the output has changed based on these updates.

If you want to inspect these changes locally, you can use the following code to check out a new branch:

git fetch origin update/packages
git checkout update/packages

Auto-generated by create-pull-request on 2024-11-05

Thank you!

Thank you for your pull request :smiley:

:robot: This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

:dart: correct output

:framed_picture: correct figures

:question: new warnings

:bangbang: new errors

Rendered Changes

The following changes were observed in the rendered markdown documents:

01-rstudio-intro.md | 2 +- 02-project-intro.md | 2 +- 03-seeking-help.md | 4 +- config.yaml (gone) | 112 - fig/23-statistics-rendered-unnamed-chunk-4-1.png | Bin 4730 -> 4692 bytes fig/23-statistics-rendered-unnamed-chunk-4-2.png | Bin 4489 -> 4469 bytes ...nreg-diagnostics-rendered-unnamed-chunk-8-1.png | Bin 24376 -> 24441 bytes md5sum.txt | 76 +- renv.lock (gone) | 2157 -------------------- 9 files changed, 42 insertions(+), 2311 deletions(-)

What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible. This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

:stopwatch: Updated at 2024-11-05 00:21:35 +0000

UCL-ARC / r-amr-epidemiology

Update 24 packages #36

Thank you!

Rendered Changes