UCL-CCS / TIES

Topology Superimposition based on joint graph traversal
MIT License
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Add a new rule for Search Space Optimisation when the molecules are mostly rings #244

Closed bieniekmateusz closed 2 years ago

bieniekmateusz commented 3 years ago

We currently exclude rings but the molecule might leave very few atoms after that. For example these molecules: https://github.com/rdkit/rdkit/issues/1585

In this case removing initially the rings might restrict the search space too much.

One potential solution to this is to revert to the full search when some threshold is met.

This is an extension to the optimisation #107