UCL-CCS / TIES

Topology Superimposition based on joint graph traversal
MIT License
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Constraint files for arbitrary water models #289

Closed adw62 closed 2 years ago

adw62 commented 2 years ago

For this line here: https://github.com/UCL-CCS/TIES20/blob/master/ties/generator.py#L626

Will this result in the oxygen in TIP4P or SPC water models getting contained? Spotted this while borrowing your code to build constraint files. I'm not sure how important this is but might make the equilibration less effective?

adw62 commented 2 years ago

HOH can be common resname for TIP3P aswell

bieniekmateusz commented 2 years ago

Thanks, will update it shortly.

bieniekmateusz commented 2 years ago

Thanks, updated.