finding hits with no Alias name in the downloaded files

[timlevine]

The web site has successfully translated all the NP_xxxxxx identifiers into the proper yeast aliases (Abc1 etc). A user will find the alias name, but then fail to find that easily in the downloaded file!

Two options: • Search through all 6077 files and replace strings of NP_xxxxxx with the correct aliases (+ padding to keep columnation in tables at top of files)

• provide a lookup table somewhere similar to the one we already have on the front page to link alias with systematic names (YAR001W etc)

2nd one is easier!!

[ilectra]

@timlevine How about adding the alias name in the hover-over text? Or keep both names in the label of the hit (like NP_009935.1/RVS161 )?

[timlevine]

the NPxyzabc information is completely unhelpful to anyone!

Also, the Match number is not needed - it could be dropped. If you keep a 2 line presentation the second line could go under the name and have the range of residues matched within the target, so people can identify the relevant part of the targets

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From: Ilektra Christidi notifications@github.com Sent: Friday, January 5, 2018 3:17:21 PM To: UCL/HHyeast-server Cc: Levine, Tim; Mention Subject: Re: [UCL/HHyeast-server] finding hits with no Alias name in the downloaded files (#29)

@timlevinehttps://github.com/timlevine How about adding the alias name in the hover-over text? Or keep both names in the label of the hit (like NP_009935.1/RVS161 )?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/UCL/HHyeast-server/issues/29#issuecomment-355579275, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AM5sGEtIPwD8n2SuBwgKbqxED21P8hu-ks5tHj0BgaJpZM4RJsNz.

[ilectra]

I've fixed your issue with the hover-over text already, you'll see it on the server soon (there's no match number anymore, and all the info you want is there, in 3 nice, neat lines - we can add as many as we want). What I'm asking now is different: where to put this alias-systematic name mapping? I thought the hover text or label might be a good place, any other ideas?

[timlevine]

not sure what you mean about the end user seeing the mapping

Is it so that when they download the report they can decode it?

if so maybe it could go on the hover text. Also, there should be special link (front page of the HHyeast database) to a single downloadable excel file that has all the names we use, so users can use this offline with their downloaded reports.

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From: Ilektra Christidi notifications@github.com Sent: Friday, January 5, 2018 3:25:02 PM To: UCL/HHyeast-server Cc: Levine, Tim; Mention Subject: Re: [UCL/HHyeast-server] finding hits with no Alias name in the downloaded files (#29)

I've fixed your issue with the hover-over text already, you'll see it on the server soon (there's no match number anymore, and all the info you want is there, in 3 nice, neat lines - we can add as many as we want). What I'm asking now is different: where to put this alias-systematic name mapping? I thought the hover text or label might be a good place, any other ideas?

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/UCL/HHyeast-server/issues/29#issuecomment-355581246, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AM5sGAJ67ZVasrG2JIkvUhvYlkwo7qBtks5tHj7OgaJpZM4RJsNz.

[ilectra]

Is it so that when they download the report they can decode it?

Yes. I'll add it to the hover text then.

As for the overall excel file, this will be the one with the complete list of new hits, when we get those ready.