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UCL / HHyeast-server

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Truncate hit list #52

Closed ilectra closed 5 years ago

ilectra commented 5 years ago

Fixes #43 Fixes #50

timlevine commented 5 years ago

I’ve had some feedback from colleagues internationally - just one lab so far. I could forward the email or we ould meet/skype... On 27 Sep 2018, 14:46 +0100, Ilektra Christidi notifications@github.com, wrote:

You can view, comment on, or merge this pull request online at:   https://github.com/UCL/HHyeast-server/pull/52 Commit Summary

• Skip hit squashing for plotting purposes for the summary view. • Speed up hit squashing. Needs debugging, once large number of hits can be visualised. • Fast hit squashing debugged. • Implement hits truncation, debug short hits filtering. • Show warning if hit list has been truncated.

File Changes

• M dataProcessing.py (68) • M lolliplotServer.py (8) • M lolliplotServerDetail.py (16)

Patch Links:

• https://github.com/UCL/HHyeast-server/pull/52.patch • https://github.com/UCL/HHyeast-server/pull/52.diff

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ilectra commented 5 years ago

@timlevine , I've updated the version on the server to my latest (debugged) one. This includes truncated hit lists and speedup optimizations. Could you please check again with your problematic ORF's, and let me know if issues still persist? Forward me the email with the comments for the moment - I'm hoping that many of them have been resolved by this latest version.

timlevine commented 5 years ago

Great stuff _ I’ll look on line over the net few days and I’ll also forward the email which is from Maya Schuldiner and her group at the Weizman institute, Israel. On 27 Sep 2018, 17:11 +0100, Ilektra Christidi notifications@github.com, wrote:

@timlevine , I've updated the version on the server to my latest (debugged) one. This includes truncated hit lists and speedup optimizations. Could you please check again with your problematic ORF's, and let me know if issues still persist? Forward me the email with the comments for the moment - I'm hoping that many of them have been resolved by this latest version. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub, or mute the thread.