COPIED from an email I just sent in case you dont get to read that:
Hi Ilektra (and Asif)
I just found another missing file: YAL008W = Fun14 or Mcp3
If we could work out how many cases there are of genuine ORFs that we are missing, could I create files using HHpred (online) and could you add them to HHyeast?
Tim
PREVIOUS:
From: Levine, Tim
Sent: Monday, October 22, 2018 9:42 AM
To: Christidi, Ilektra-Athanasia
Subject: Re: failure to pull up some files in HHyeast
Hi Ilektra,
I found an ORF which has the file missing:
hhyeast.ukwest.cloudapp.azure.com:5000/YGL197W (=MDS3)
And we have missed YOR376W, but seemingly for a different reason, because there's a different message: "YOR376W is not a valid ORF." It's as if the ORF list we used to start with did not include it.
COPIED from an email I just sent in case you dont get to read that:
Hi Ilektra (and Asif) I just found another missing file: YAL008W = Fun14 or Mcp3
If we could work out how many cases there are of genuine ORFs that we are missing, could I create files using HHpred (online) and could you add them to HHyeast? Tim
PREVIOUS: From: Levine, Tim Sent: Monday, October 22, 2018 9:42 AM To: Christidi, Ilektra-Athanasia Subject: Re: failure to pull up some files in HHyeast
Hi Ilektra,
I found an ORF which has the file missing: hhyeast.ukwest.cloudapp.azure.com:5000/YGL197W (=MDS3)
And we have missed YOR376W, but seemingly for a different reason, because there's a different message: "YOR376W is not a valid ORF." It's as if the ORF list we used to start with did not include it.
All the best, Tim