Big merge of many things (`start_deps`) into `master` - [merged]

[tdowrick]

In GitLab by @AnastasisGeorgoulas on May 7, 2019, 10:19

_Merges startdeps -> master

Will resolve #48. Starts up PLUS Server and the pyIGTLink server. And other things

[tdowrick]

In GitLab by @ThomasDowrick on Jun 3, 2019, 15:11

added 25 commits

• 4614073d - Fix position in PLUS Remote
• c4373ed0 - Explcitity set the colour maps of US (Red) and CT/MRI (Grey) volumes
• 25df910d - Issue #57: Add opacity slider for slice views
• e913b051 - Issue #57: Set calibration time to 10 seconds by default
• 4b6047c7 - Collapse live reconstruction box by default
• dc3ada92 - Remove commented lines
• 14602ae4 - Check the CT node with correct name and enable visibility
• 622434e9 - Set the CT node name and enbale visibility
• 55f5a755 - Selecting the right CT node by selecting by class and empty name
• 2ef316a8 - Merge branches
• 3d6ddf80 - Switch bg/fg for better visibility
• a3b3e2b9 - Issue N/A: Add launch files to run slicelet
• efde9c6a - Launch slicelet fullscreen
• 13a637e9 - WIP: Auto load CT scan
• f44c4517 - Add status bar to layout, and spacer to occupy space
• 23a6e4e5 - Add initial config file
• 9b82dfa1 - Add QTextEdit for status/logging messages
• 810c69ff - Update message when US/CT detected
• bab34274 - Update Slicer launch command#
• 0ac43abc - Autoload CT from remote
• 4c19eab2 - Issue #7: Add status message on transform save
• 950d5911 - Auto expand pivot calibration box when transforms have been loaded
• b88659aa - Don't start pyIGTLink automatically
• f396dea6 - Merge branch 'misc-changes' into start_deps
• 889e289b - Pushing changes from Mock OR laptop

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[tdowrick]

In GitLab by @ThomasDowrick on Jun 3, 2019, 15:11

marked as a Work In Progress from 13a637e98d266312bf383ec317f7bc405a0518a9

[tdowrick]

In GitLab by @ThomasDowrick on Jun 5, 2019, 11:36

added 16 commits

• ffb4afba - A config file to hold settings and names
• 575fe430 - Replace image names with the ones from the config
• 1a4736cb - Replace image names with the ones from the config
• b9ae36da - Add the pyIGTLink server settings
• 70315c41 - Add more PLUS settings to config file
• 758a55ec - Add IGTLink connector name
• 8916bb02 - Add PLUS path and executables
• 4e4926c6 - Fix typo
• dcce5124 - Revert the executables to hardcoded
• 3d394971 - Change the pyIGTLink name to BK
• 1cacbba4 - Reverse the node ID and class names
• 3e128ef6 - Change for the name used in renaming the node
• 406c4684 - Merge branch 'start_deps' into add-config-file
• 29de9cd4 - Get the right import from the package
• a8bf1d88 - Commenting the start up of the pyIGTLink until resolution in Slicer
• a5d2d6ad - The right config variable

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[tdowrick]

In GitLab by @ThomasDowrick on Jun 5, 2019, 11:40

added 1 commit

• 862dbb40 - Add the path to the output dir

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[tdowrick]

In GitLab by @ThomasDowrick on Jun 19, 2019, 10:32

added 13 commits

• 8dd931ac - Fix typo
• 06ad9f90 - Fix typo
• e42dd977 - Use of the new output directories
• e4bf4409 - A new button to save both the scene and the transforms
• 618386e7 - A condition to check for the same timestamp as the scene save
• 4d8689ec - Merge branch 'add-save-button' of...
• 4e26379d - Use of the standard library for building the path to file
• 0f992d80 - Consistent use of directory
• 3f39549e - Move the config.py in sbn/ to solve import error
• 1020d025 - Import the config.py without using relative imports
• 2b4d9152 - Unnecessary machinery as saveScene already saves the trasnforms
• ac8eb83b - Add launch scripts for bk and plus
• 61225bd5 - Save all data in mrb file, fix message when saving scene. Delete unused reference to default.json

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[tdowrick]

In GitLab by @ThomasDowrick on Jul 12, 2019, 15:02

added 5 commits

• 9ae6a3a1 - Issue #68: Update PLUS Config to inculde silver and orange passive
• ca30220f - Issue #68: Add Neurostim and CUSA transforms to config. Rename Config...
• 6bde17df - Issue #68: Add CUSA/Stim transform to list that the Slicelet expects to see
• 54460fb4 - Issue #68: Add needle models for CUSA/neurostim, set transform hierarchy for CUSA/neurostim
• 06dafd6a - Issue #68: Rename transforms in PLUS config file & fix typos

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[tdowrick]

In GitLab by @ThomasDowrick on Jul 15, 2019, 13:01

added 1 commit

• 07483791 - Issue #68: Remove CUSA for the time being, as we won't have the tracker in time to test

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[tdowrick]

In GitLab by @ThomasDowrick on Jul 15, 2019, 13:04

added 1 commit

• 881d6989 - Issue #68: Remove CUSA for the time being, as we won't have the tracker in time to test

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[tdowrick]

In GitLab by @ThomasDowrick on Jul 22, 2019, 13:49

added 2 commits

• fe4ed9a3 - Killing remaing servers before relaunching
• 8a78268d - Merge branch 'start_deps' of...

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[tdowrick]

In GitLab by @DavidPerez-Suarez on Aug 20, 2019, 16:11

added 2 commits

• a6d285f6 - Add start up info
• 2bc63c83 - Update README.rst

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[tdowrick]

In GitLab by @DavidPerez-Suarez on Aug 20, 2019, 16:27

added 3 commits

• 2a18b566 - Add a method to check the 'Add timestamp to filename' box
• 8eebd640 - Changes to take into account searching elements by class name rather than name
• 92b79059 - Adding calibration for fCAL

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[tdowrick]

In GitLab by @DavidPerez-Suarez on Aug 20, 2019, 16:37

added 4 commits

• 189a1ace - Add a neurostimulation for saving and displaying the point
• 938d0439 - Add a getter method for the neurostim transform only based on node name
• 2b3b31bb - Assuming there is only one returned transform
• 38063859 - Attach call to the save and display neurostim button when clicked

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[tdowrick]

In GitLab by @DavidPerez-Suarez on Aug 27, 2019, 14:57

unmarked as a Work In Progress

[tdowrick]

In GitLab by @DavidPerez-Suarez on Aug 27, 2019, 14:57

changed title from {-WIP: Start dependencies automatically-} to {+Big merge of many things (start_deps) into master+}

[tdowrick]

In GitLab by @DavidPerez-Suarez on Aug 27, 2019, 14:57

changed the description

[tdowrick]

In GitLab by @DavidPerez-Suarez on Aug 27, 2019, 14:57

changed target branch from ageorgou/extra-gui-features to master

[tdowrick]

In GitLab by @ThomasDowrick on Dec 10, 2019, 11:58

merged