Render memory plots

[willGraham01]

For https://github.com/UCL/TLOmodel/issues/1355 |

Edits the "run statistics" page to display the captured memory statistics, which the profiling runs were previously capturing but not displaying.

Making this it's own PR as the "run statistics" page is starting to get a bit bloated - it has no internal navigation but scrolling through the plots is quite a chore.

• Could add a collapse option for each individual plot
• Could try adding a "contents" at the top to allow for quick navigation

Opinions on this welcome :smile:

Stats we're now plotting

The following (plottable) statistics are being captured by the profiling run; and those with a checked box are currently being plotted (includes those added by this PR):

• [ ] "duration": 26804.275735139847, (Duration of the entire profiling run)
• [x] "cpu_time": 26801.766409699998,
• [ ] "disk_reads": 1465,
• [ ] "disk_writes": 63014,
• [x] "disk_read_MB": 79.811584,
• [x] "disk_write_MB": 832.028672,
• [x] "disk_read_s": 0.505,
• [x] "disk_write_s": 33.234,
• [x] "pop_df_rows": 62000,
• [x] "pop_df_cols": 444,
• [x] "pop_df_mem_MB": 115.898045, (Pop. dataframe size in memory)
• [x] "pop_df_times_extended": 12,

[willGraham01]

Have added the contents page - repo setting require an up-to-date review so sorry for notification noise :sweat_smile:

[tamuri]

Opinions on this welcome

Take inspiration from craigslist - single line of anchor links across the top, pls.

[willGraham01]

single line of anchor links across the top, pls.

Matt's .. contents:: suggestion generates a vertical list of links at the top:

And makes the individual plot titles themselves clickable, which links you back to the contents at the top of the page.

I know this isn't a single line of links, but my niave search of the sphinx documentation isn't giving me any promising results for formatting the table of contents horizontally rather than vertically. hlist is for manual lists, and contents itself doesn't have any formatting options.

I can make the website builder itself write a horizontal bar, but is there any value in doing that over using what sphinx already provides in two lines?

[matt-graham]

Adding some custom CSS similar to

#list-of-summary-statistics ul {
    list-style: none;
    padding: 0;
}

#list-of-summary-statistics li {
    display: inline;
    margin-right: 10px;
}

#list-of-summary-statistics li p {
    display: inline;
}

would make the list items displayed inline (the li p entry is needed as weirdly Sphinx seems to wrap the titles in the list items in a p tag for some reason), though still not on a single line as too many

I prefer the Sphinx default that @willGraham01 currently has though of items on separate lines as easier to scan through

[tamuri]

The Sphinx output is fine - thanks!