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UCL / hivpy

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Anti-retroviral treatment #83

Open ageorgou opened 2 years ago

mmcleod89 commented 1 year ago
mmcleod89 commented 2 months ago

Look at long_acting_treatment branch of SAS (https://github.com/UCL/hiv-modelling/blob/long_acting_treatment/hiv_synthesis_laa_w.sas) to include len and cab o_drug means on that drug e.g. o_len

mmcleod89 commented 2 months ago

see * LOSS OF TRANSMITTED RESISTANCE MUTATIONS FROM MAJORITY VIRUS ("LOSS OF PERSISTENCE"); for how it goes from majority to minority.

If a mutation is acquired in transmission then it starts in the majority virus. The mutation variable without c_ or e_ is used in a few ways; initially it is set to mutation_p i.e. whether the transmission partner has the virus, which indicates the possibility of mutation transmission, and afterwards can be set to 0 if not transmitted and after that point indicates that the transmission of mutation did happen. It seems like it might also be used in other ways?