Allows user to specify the coordinate orientation from the command line using:
--orient <ORDER>, where <ORDER> is a three character code e.g. RAI or LPS. Should help with #11.
Reslicing is turned off by default. If the user passes the switch --head the image will be resampled into a 344x344x127 matrix which assumes the input is a mMR brain MRAC. This is currently hard-coded, but the default addresses #8.
nm_mrac2muAllows user to specify the coordinate orientation from the command line using:
--orient <ORDER>, where<ORDER>is a three character code e.g.RAIorLPS. Should help with #11.Reslicing is turned off by default. If the user passes the switch
--headthe image will be resampled into a344x344x127matrix which assumes the input is a mMR brain MRAC. This is currently hard-coded, but the default addresses #8.