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UCLA-VAST / minimap2-acceleration

Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository
http://vast.cs.ucla.edu/sites/default/files/publications/minimap2-acc-approved.pdf
MIT License
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Compiling on ARM architecture #5

Closed PMuchina closed 3 years ago

PMuchina commented 3 years ago

I am working on a jetson nano platform (ARM). I get this error while compiling

cc: error: unrecognized command line option ‘-msse2’ make: *** [Makefile:51: ksw2_ll_sse.o] Error 1

dotkrnl commented 3 years ago

The original Minimap2 uses the SSE2 instruction set, so does the test data generator in this project. You may want to run the generator on an x86 computer to generate the data and copy the data to your ARM platform.

Note that we did not test on Jetson and I am not sure if the CUDA code works. The CPU acceleration may not work either because it was optimized for Intel CPU.