UCLOrengoGroup / cath-todo

Issues relating to the CATH protein structure classification web pages
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467 v4.2 FunFam empty .sto files #28

Open sayonidas03 opened 6 years ago

sayonidas03 commented 6 years ago

467 v4.2 FunFams in /cath/data/v4_2_0/funfam/families are empty.

These FunFams include:

1.10.10.10-ff-136853
1.10.10.10-ff-263001
1.10.10.10-ff-264216
1.10.10.10-ff-266670
1.10.10.10-ff-60571
1.10.10.10-ff-72145
...
..

The entire list of empty FunFams is here: empty_v4.2_funfams_list.txt

sayonidas03 commented 6 years ago

Case 1: The first FunFam in the above list, 1.10.10.10/FF/136853 has only 1 Gene3D sequence which might not have any UniProt entry attached to it.

Case 2: Another FunFam in the list, 2.30.29.30/FF/21749 seems to have 0 Gene3D sequences but 30 CATH domains (e.g. 4dx8A00) assigned to it.