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UCLOrengoGroup / cath-tools

Protein structure comparison tools such as SSAP and SNAP
http://cath-tools.readthedocs.io
GNU General Public License v3.0
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--html-output makes cath-resolve-hits reject previously accepted data #24

Closed tonyelewis closed 7 years ago

tonyelewis commented 7 years ago

From Jon:

Just started to look at some issues with the old HMMs that are fixed in the new,, using the new HTML output option, :)

However, if I add the flag --html-output it crashes (though it works fine if I don't have that flag)

./cath-resolve-hits --input-format hmmsearch_out /cath/homes2/ucbcjle/zn56_human.fa.out.hmmsearch --output-file test.txt --html-output

2016-12-18 14:16:59.074481 [cath-resolve-hits|error ] Unable to parse/process resolve-hits input data file "zn56_human.fa.out.hmmsearch" of format hmmsearch_out. Error was: Hit's score must be strictly greater than 0 else the algorithm doesn't work (because there's no way to no how to trade scores off against empty space)

tonyelewis commented 7 years ago

Added test for this issue in 17ebd0bce6a1118ca626d552cb79be3242e6340f