Error building cath-tools with boost 1.6x.x

[euduca]

I'm trying to install de cath-tools because there is a error in my Interproscan analysis when the "cath-resolve-hits" is called. How can I install my cath-tools?

Thanks.

In the end of this post I put the files with the erros from all 1.6x.x boost versions . The S.O. is:

$ cat /etc/redhat-release 
Scientific Linux release 6.8 (Carbon)

The error is (gsl, cmake and boost were compiled using gcc-5.5.0):

2017-12-21 16:46:55,730 [amqEmbeddedWorkerJmsContainer-7] [uk.ac.ebi.interpro.scan.management.model.implementations.RunBinaryStep:188] ERROR - Command line failed with exit code: 1
Command: bin/gene3d/4.1.0/cath-resolve-hits --input-format=hmmer_domtmblout --output-file /ibers/ernie/home/eac16/scratch/projects/master/idps/interpro/fastas/Tc01v2_p005490.1/temp/bert_20171221_164603716_3ld8//jobGene3d/000000000001_000000000001_one.raw.out /ibers/ernie/home/eac16/scratch/projects/master/idps/interpro/fastas/Tc01v2_p005490.1/temp/bert_20171221_164603716_3ld8//jobGene3d/000000000001_000000000001.raw.domtblout.out 
Error output from binary:
bin/gene3d/4.1.0/cath-resolve-hits: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by bin/gene3d/4.1.0/cath-resolve-hits)

Following the "Compiling Binaries" guide from Interproscan documentation didn't work and I decided to install my own version of cath-tools.

$ cd /ibers/ernie/home/eac16/sources
$ module load gcc/5.5.0
$ module load python/2.7.5
$ PATH=/ibers/ernie/home/eac16/local/cmake/3.10.1/bin:$PATH && export PATH
$ LD_LIBRARY_PATH=/ibers/ernie/home/eac16/local/boost/1.60.0/lib:$LD_LIBRARY_PATH && export LD_LIBRARY_PATH
$ PATH=/ibers/ernie/home/eac16/local/gsl/2.4/bin:$PATH && export PATH
$ LD_LIBRARY_PATH=/ibers/ernie/home/eac16/local/gsl/2.4/lib:$LD_LIBRARY_PATH && export LD_LIBRARY_PATH
$ export CC=/cm/shared/apps/gcc/5.5.0/bin/gcc
$ git clone https://github.com/UCLOrengoGroup/cath-tools.git
$ cd cath-tools
$ mkdir build
$ cd build
$ cmake -DGSL_ROOT_DIR=/ibers/ernie/home/eac16/local/gsl/2.4/ -DBOOST_ROOT=/ibers/ernie/home/eac16/local/boost/1.60.0/ -DCMAKE_BUILD_TYPE=RELEASE ../
-- The C compiler identification is GNU 5.5.0
-- The CXX compiler identification is GNU 5.5.0
-- Check for working C compiler: /cm/shared/apps/gcc/5.5.0/bin/gcc
-- Check for working C compiler: /cm/shared/apps/gcc/5.5.0/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /cm/shared/apps/gcc/5.5.0/bin/c++
-- Check for working CXX compiler: /cm/shared/apps/gcc/5.5.0/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Running under CMake v3.10.1
-- Found GSL: /ibers/ernie/home/eac16/local/gsl/2.4/include (found version "2.4") 
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Boost version: 1.60.0
-- Found the following Boost libraries:
--   filesystem
--   iostreams
--   log
--   program_options
--   serialization
--   timer
--   unit_test_framework
--   system
--   regex
--   date_time
--   log_setup
--   thread
--   chrono
--   atomic
-- Configuring done
-- Generating done
-- Build files have been written to: /ibers/ernie/home/eac16/sources/cath-tools/build

The checking is ok, but:

[eac16@bert build]$ make
Scanning dependencies of target ct_common
[  0%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/algorithm/random_split.cpp.o

[  0%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/argc_argv_faker.cpp.o
[  0%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/batch/batch_functions.cpp.o
[  0%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/boost_addenda/graph/spanning_tree.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/boost_addenda/log/log_to_ostream_guard.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/command_executer.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/exception/invalid_argument_exception.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/exception/not_implemented_exception.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/exception/out_of_range_exception.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/exception/runtime_error_exception.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/file/find_file.cpp.o
[  1%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/file/ofstream_list.cpp.o
[  2%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/file/open_fstream.cpp.o
[  2%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/file/path_or_istream.cpp.o
[  2%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/file/temp_file.cpp.o
[  2%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/logger.cpp.o
[  2%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/program_exception_wrapper.cpp.o
[  2%] Building CXX object source/CMakeFiles/ct_common.dir/src_common/common/test_or_exe_run_mode.cpp.o
[  2%] Linking CXX static library libct_common.a
[  2%] Built target ct_common
Scanning dependencies of target ct_remain
[  2%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/align_refining.cpp.o
[  2%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/alignment_acquirer.cpp:40:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/alignment_acquirer.cpp:40:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/alignment_acquirer.cpp:40:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  2%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/cora_aln_file_alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/cora_aln_file_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/cora_aln_file_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/cora_aln_file_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  2%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/do_the_ssaps_alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/do_the_ssaps_alignment_acquirer.cpp:43:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/do_the_ssaps_alignment_acquirer.cpp:43:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/do_the_ssaps_alignment_acquirer.cpp:43:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  2%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/fasta_aln_file_alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/fasta_aln_file_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/fasta_aln_file_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/fasta_aln_file_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/post_refine_alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/post_refine_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/post_refine_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/post_refine_alignment_acquirer.cpp:29:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/residue_name_alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/residue_name_alignment_acquirer.cpp:34:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/residue_name_alignment_acquirer.cpp:34:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/residue_name_alignment_acquirer.cpp:34:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/ssap_aln_file_alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/ssap_aln_file_alignment_acquirer.cpp:31:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/ssap_aln_file_alignment_acquirer.cpp:31:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/ssap_aln_file_alignment_acquirer.cpp:31:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/alignment_acquirer/ssap_scores_file_alignment_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/ssap_scores_file_alignment_acquirer.cpp:40:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/ssap_scores_file_alignment_acquirer.cpp:40:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/alignment_acquirer/ssap_scores_file_alignment_acquirer.cpp:40:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/pdbs_acquirer/domain_defn_pdbs_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/domain_defn_pdbs_acquirer.cpp:30:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/domain_defn_pdbs_acquirer.cpp:30:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/domain_defn_pdbs_acquirer.cpp:30:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/pdbs_acquirer/file_list_pdbs_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/file_list_pdbs_acquirer.cpp:26:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/file_list_pdbs_acquirer.cpp:26:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/file_list_pdbs_acquirer.cpp:26:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/pdbs_acquirer/istream_pdbs_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/istream_pdbs_acquirer.cpp:27:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/istream_pdbs_acquirer.cpp:27:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/istream_pdbs_acquirer.cpp:27:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  3%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/pdbs_acquirer/pdbs_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/pdbs_acquirer.cpp:32:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/pdbs_acquirer.cpp:32:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/pdbs_acquirer/pdbs_acquirer.cpp:32:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/selection_policy_acquirer/selection_policy_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/selection_policy_acquirer/selection_policy_acquirer.cpp:27:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/selection_policy_acquirer/selection_policy_acquirer.cpp:27:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/selection_policy_acquirer/selection_policy_acquirer.cpp:27:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/superposition_acquirer/align_based_superposition_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/align_based_superposition_acquirer.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/align_based_superposition_acquirer.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/align_based_superposition_acquirer.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/align_based_superposition_acquirer.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/align_based_superposition_acquirer.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/align_based_superposition_acquirer.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/acquirer/superposition_acquirer/superposition_acquirer.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/superposition_acquirer.cpp:24:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/superposition_acquirer.cpp:24:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/acquirer/superposition_acquirer/superposition_acquirer.cpp:24:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/alignment.cpp.o
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/alignment_action.cpp.o
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/alignment_context.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_context.hpp:27,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_context.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_context.hpp:27,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_context.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_context.hpp:27,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_context.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/alignment_coord_extractor.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_coord_extractor.cpp:30:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_coord_extractor.cpp:30:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/alignment_coord_extractor.cpp:30:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  4%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/alignment_row.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_atom_selection_policy/common_atom_select_ca_policy.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_atom_selection_policy/common_atom_select_cb_policy.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_atom_selection_policy/common_atom_selection_policy.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_residue_selection_policy/common_residue_score_based_selection_policy.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_residue_selection_policy/common_residue_select_all_policy.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_residue_selection_policy/common_residue_select_best_score_percent_policy.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_residue_selection_policy/common_residue_select_min_score_policy.cpp.o
[  5%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/common_residue_selection_policy/common_residue_selection_policy.cpp.o
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/detail/multi_align_builder.cpp.o
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/detail/multi_align_group.cpp.o
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/matrix_plotter/gnuplot_matrix_plotter.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/third_party_code/gnuplot-iostream.h:80,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/dyn_prog_align/detail/matrix_plotter/gnuplot_matrix_plotter.cpp:28:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/third_party_code/gnuplot-iostream.h:80,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/dyn_prog_align/detail/matrix_plotter/gnuplot_matrix_plotter.cpp:28:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/third_party_code/gnuplot-iostream.h:80,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/dyn_prog_align/detail/matrix_plotter/gnuplot_matrix_plotter.cpp:28:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/matrix_plotter/matrix_plotter.cpp.o
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/path_step.cpp.o
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/return_path_matrix.cpp.o
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/score_accumulation_matrix.cpp.o
[  6%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/string_aligner/benchmark_dyn_prog_string_aligner.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/string_aligner/gen_dyn_prog_string_aligner.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/detail/string_aligner/string_aligner.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/dyn_prog_aligner.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/dyn_prog_score_source/dyn_prog_score_source.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/dyn_prog_score_source/entry_querier_dyn_prog_score_source.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/dyn_prog_score_source/mask_dyn_prog_score_source.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/dyn_prog_score_source/new_matrix_dyn_prog_score_source.cpp.o
[  7%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/dyn_prog_score_source/old_matrix_dyn_prog_score_source.cpp.o
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/dyn_prog_score_source/sequence_string_dyn_prog_score_source.cpp.o
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/ssap_code_dyn_prog_aligner.cpp.o
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/dyn_prog_align/std_dyn_prog_aligner.cpp.o
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/gap/alignment_gap.cpp.o
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/gap/gap_penalty.cpp.o
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/io/align_scaffold.cpp.o
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/io/alignment_io.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/alignment_io.cpp:47:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/alignment_io.cpp:47:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/alignment_io.cpp:47:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  8%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/io/outputter/horiz_align_outputter.cpp.o
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/io/outputter/html_align_outputter.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/outputter/html_align_outputter.hpp:26,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/outputter/html_align_outputter.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/outputter/html_align_outputter.hpp:26,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/outputter/html_align_outputter.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/strucs_context.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/outputter/html_align_outputter.hpp:26,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/io/outputter/html_align_outputter.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/options_block/alignment_input_options_block.cpp.o
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/options_block/alignment_input_spec.cpp.o
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/pair_alignment.cpp.o
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/refiner/alignment_refiner.cpp.o
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/refiner/detail/alignment_split.cpp.o
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/refiner/detail/alignment_split_list.cpp.o
[  9%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/refiner/detail/alignment_split_mapping.cpp.o
[ 10%] Building CXX object source/CMakeFiles/ct_remain.dir/uni/alignment/refiner/indexed_refiner.cpp.o
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/scan/spatial_index/spatial_index.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
 # pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
                                                                               ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/scan/spatial_index/spatial_index.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/resolve.hpp:26,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/push.hpp:24,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/detail/streambuf/indirect_streambuf.hpp:31,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream_buffer.hpp:22,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/iostreams/stream.hpp:21,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/detail/iterator_source.hpp:14,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream/stream.hpp:16,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi/stream.hpp:15,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/home/qi.hpp:30,
                 from /ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/spirit/include/qi.hpp:16,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/src_common/common/string/string_parse_tools.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_atom.hpp:33,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb_residue.hpp:37,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/file/pdb/pdb.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/scan/spatial_index/spatial_index.hpp:29,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:34,
                 from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:21:
/ibers/ernie/home/eac16/local/boost/1.60.0/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
 # pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
                                                                                    ^
In file included from /ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:21:0:
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp: In instantiation of ‘std::vector<T> cath::align::prepare_vec_based_simple_locn_index_store(const cath::protein&, const cath::align::fot&, const Keyer&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::scan::detail::scan_index_vector_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>]’:
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:300:95:   required from ‘cath::align::vec_of_vectors_refine_index<Cell>::vec_of_vectors_refine_index(const std::integral_constant<cath::scan::sod, Sod>&, const cath::protein&, const cath::align::fot&, const float&) [with cath::scan::sod Sod = (cath::scan::sod)0u; Cell = std::vector<cath::scan::simple_locn_index>]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:170:6:   required from ‘index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&)::<lambda()> [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:181:44:   required from ‘struct index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]::<lambda()>’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:163:42:   required from ‘void index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:227:51:   required from ‘int index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:239:84:   required from ‘std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > > index_type_pair_processor<std::tuple<_Args1 ...> >::operator()(const cath::protein&, const cath::protein&, const cath::align::alignment&) [with Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:250:113:   required from here
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:200:67: error: could not convert ‘(cath::align::fot)arg_from_or_to’ from ‘cath::align::fot’ to ‘bool’
      const auto the_view = view_vector_of_rotns_coords_and_indices(
                                                                   ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:215:41: error: use of ‘auto cath::scan::detail::store_maker<(cath::scan::sod)0u, Store>::operator()(const Rng&, const Keyer&, const Crit&) [with Rng = std::vector<cath::scan::simple_locn_index>; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>; Crit = cath::scan::simple_locn_crit; Store = cath::scan::detail::scan_index_vector_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >]’ before deduction of ‘auto’
      scan::detail::store_maker<Sod, T>{}(
                                         ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp: In instantiation of ‘std::vector<T> cath::align::prepare_vec_based_simple_locn_index_store(const cath::protein&, const cath::align::fot&, const Keyer&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::scan::detail::scan_index_vector_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>]’:
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:300:95:   required from ‘cath::align::vec_of_vectors_refine_index<Cell>::vec_of_vectors_refine_index(const std::integral_constant<cath::scan::sod, Sod>&, const cath::protein&, const cath::align::fot&, const float&) [with cath::scan::sod Sod = (cath::scan::sod)1u; Cell = std::vector<cath::scan::simple_locn_index>]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:170:6:   required from ‘index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&)::<lambda()> [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:181:44:   required from ‘struct index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]::<lambda()>’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:163:42:   required from ‘void index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:228:51:   required from ‘int index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with T = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:239:84:   required from ‘std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > > index_type_pair_processor<std::tuple<_Args1 ...> >::operator()(const cath::protein&, const cath::protein&, const cath::align::alignment&) [with Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:250:113:   required from here
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:200:67: error: could not convert ‘(cath::align::fot)arg_from_or_to’ from ‘cath::align::fot’ to ‘bool’
      const auto the_view = view_vector_of_rotns_coords_and_indices(
                                                                   ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:215:41: error: use of ‘auto cath::scan::detail::store_maker<(cath::scan::sod)1u, Store>::operator()(const Rng&, const Keyer&, const Crit&) [with Rng = std::vector<cath::scan::simple_locn_index>; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>; Crit = cath::scan::simple_locn_crit; Store = cath::scan::detail::scan_index_vector_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >]’ before deduction of ‘auto’
      scan::detail::store_maker<Sod, T>{}(
                                         ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp: In instantiation of ‘std::vector<T> cath::align::prepare_vec_based_simple_locn_index_store(const cath::protein&, const cath::align::fot&, const Keyer&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::scan::detail::scan_index_hash_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>]’:
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:399:94:   required from ‘cath::align::vec_of_hashes_refine_index<Cell>::vec_of_hashes_refine_index(const std::integral_constant<cath::scan::sod, Sod>&, const cath::protein&, const cath::align::fot&, const float&) [with cath::scan::sod Sod = (cath::scan::sod)0u; Cell = std::vector<cath::scan::simple_locn_index>]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:170:6:   required from ‘index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&)::<lambda()> [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:181:44:   required from ‘struct index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]::<lambda()>’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:163:42:   required from ‘void index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:227:51:   required from ‘int index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:239:84:   required from ‘std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > > index_type_pair_processor<std::tuple<_Args1 ...> >::operator()(const cath::protein&, const cath::protein&, const cath::align::alignment&) [with Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:250:113:   required from here
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:200:67: error: could not convert ‘(cath::align::fot)arg_from_or_to’ from ‘cath::align::fot’ to ‘bool’
      const auto the_view = view_vector_of_rotns_coords_and_indices(
                                                                   ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:215:41: error: use of ‘auto cath::scan::detail::store_maker<(cath::scan::sod)0u, Store>::operator()(const Rng&, const Keyer&, const Crit&) [with Rng = std::vector<cath::scan::simple_locn_index>; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>; Crit = cath::scan::simple_locn_crit; Store = cath::scan::detail::scan_index_hash_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >]’ before deduction of ‘auto’
      scan::detail::store_maker<Sod, T>{}(
                                         ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp: In instantiation of ‘std::vector<T> cath::align::prepare_vec_based_simple_locn_index_store(const cath::protein&, const cath::align::fot&, const Keyer&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::scan::detail::scan_index_hash_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>]’:
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:399:94:   required from ‘cath::align::vec_of_hashes_refine_index<Cell>::vec_of_hashes_refine_index(const std::integral_constant<cath::scan::sod, Sod>&, const cath::protein&, const cath::align::fot&, const float&) [with cath::scan::sod Sod = (cath::scan::sod)1u; Cell = std::vector<cath::scan::simple_locn_index>]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:170:6:   required from ‘index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&)::<lambda()> [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:181:44:   required from ‘struct index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]::<lambda()>’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:163:42:   required from ‘void index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:228:51:   required from ‘int index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with T = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:239:84:   required from ‘std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > > index_type_pair_processor<std::tuple<_Args1 ...> >::operator()(const cath::protein&, const cath::protein&, const cath::align::alignment&) [with Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:250:113:   required from here
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:200:67: error: could not convert ‘(cath::align::fot)arg_from_or_to’ from ‘cath::align::fot’ to ‘bool’
      const auto the_view = view_vector_of_rotns_coords_and_indices(
                                                                   ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:215:41: error: use of ‘auto cath::scan::detail::store_maker<(cath::scan::sod)1u, Store>::operator()(const Rng&, const Keyer&, const Crit&) [with Rng = std::vector<cath::scan::simple_locn_index>; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>; Crit = cath::scan::simple_locn_crit; Store = cath::scan::detail::scan_index_hash_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >]’ before deduction of ‘auto’
      scan::detail::store_maker<Sod, T>{}(
                                         ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp: In instantiation of ‘std::vector<T> cath::align::prepare_vec_based_simple_locn_index_store(const cath::protein&, const cath::align::fot&, const Keyer&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::scan::detail::scan_index_lattice_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>]’:
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:513:96:   required from ‘cath::align::vec_of_lattices_refine_index<Cell>::vec_of_lattices_refine_index(const std::integral_constant<cath::scan::sod, Sod>&, const cath::protein&, const cath::align::fot&, const float&) [with cath::scan::sod Sod = (cath::scan::sod)0u; Cell = std::vector<cath::scan::simple_locn_index>]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:170:6:   required from ‘index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&)::<lambda()> [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:181:44:   required from ‘struct index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]::<lambda()>’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:163:42:   required from ‘void index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)0u; T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:227:51:   required from ‘int index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:239:84:   required from ‘std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > > index_type_pair_processor<std::tuple<_Args1 ...> >::operator()(const cath::protein&, const cath::protein&, const cath::align::alignment&) [with Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:250:113:   required from here
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:200:67: error: could not convert ‘(cath::align::fot)arg_from_or_to’ from ‘cath::align::fot’ to ‘bool’
      const auto the_view = view_vector_of_rotns_coords_and_indices(
                                                                   ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:215:41: error: use of ‘auto cath::scan::detail::store_maker<(cath::scan::sod)0u, Store>::operator()(const Rng&, const Keyer&, const Crit&) [with Rng = std::vector<cath::scan::simple_locn_index>; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>; Crit = cath::scan::simple_locn_crit; Store = cath::scan::detail::scan_index_lattice_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >]’ before deduction of ‘auto’
      scan::detail::store_maker<Sod, T>{}(
                                         ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp: In instantiation of ‘std::vector<T> cath::align::prepare_vec_based_simple_locn_index_store(const cath::protein&, const cath::align::fot&, const Keyer&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::scan::detail::scan_index_lattice_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>]’:
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:513:96:   required from ‘cath::align::vec_of_lattices_refine_index<Cell>::vec_of_lattices_refine_index(const std::integral_constant<cath::scan::sod, Sod>&, const cath::protein&, const cath::align::fot&, const float&) [with cath::scan::sod Sod = (cath::scan::sod)1u; Cell = std::vector<cath::scan::simple_locn_index>]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:170:6:   required from ‘index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&)::<lambda()> [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:181:44:   required from ‘struct index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]::<lambda()>’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:163:42:   required from ‘void index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair_sod(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with cath::scan::sod Sod = (cath::scan::sod)1u; T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:228:51:   required from ‘int index_type_pair_processor<std::tuple<_Args1 ...> >::process_index_type_pair(std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > >&, const cath::protein&, const cath::protein&, const cath::align::alignment&) [with T = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; U = cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index> >; Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:239:84:   required from ‘std::vector<std::pair<std::__cxx11::basic_string<char>, std::vector<std::pair<double, double> > > > index_type_pair_processor<std::tuple<_Args1 ...> >::operator()(const cath::protein&, const cath::protein&, const cath::align::alignment&) [with Ts = {cath::align::vec_of_vectors_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_hashes_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >, cath::align::vec_of_lattices_refine_index<std::vector<cath::scan::simple_locn_index, std::allocator<cath::scan::simple_locn_index> > >}]’
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.cpp:250:113:   required from here
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:200:67: error: could not convert ‘(cath::align::fot)arg_from_or_to’ from ‘cath::align::fot’ to ‘bool’
      const auto the_view = view_vector_of_rotns_coords_and_indices(
                                                                   ^
/ibers/ernie/home/eac16/sources/cath-tools/source/uni/alignment/refiner/indexed_refiner.hpp:215:41: error: use of ‘auto cath::scan::detail::store_maker<(cath::scan::sod)1u, Store>::operator()(const Rng&, const Keyer&, const Crit&) [with Rng = std::vector<cath::scan::simple_locn_index>; Keyer = cath::scan::res_pair_keyer<cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_x_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_y_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::detail::axis_keyer_part<cath::scan::detail::res_pair_view_z_keyer_part_spec<cath::scan::simple_locn_index, cath::scan::simple_locn_crit> >, cath::scan::res_pair_from_to_index_keyer_part>; Crit = cath::scan::simple_locn_crit; Store = cath::scan::detail::scan_index_lattice_store<std::tuple<int, int, int>, std::vector<cath::scan::simple_locn_index> >]’ before deduction of ‘auto’
      scan::detail::store_maker<Sod, T>{}(
                                         ^
make[2]: *** [source/CMakeFiles/ct_remain.dir/uni/alignment/refiner/indexed_refiner.cpp.o] Error 1
make[1]: *** [source/CMakeFiles/ct_remain.dir/all] Error 2
make: *** [all] Error 2

---

error_with_boost_1.60.0.txt error_with_boost_1.61.0.txt error_with_boost_1.62.0.txt error_with_boost_1.63.0.txt error_with_boost_1.64.0.txt error_with_boost_1.65.0.txt

[tonyelewis]

Thanks for your interest in cath-tools and for your efforts to tackle this problem.

cath-tools provides pre-built binary executables on the releases page. Please can you try downloading the cath-resolve-hits.centos6 file, making it executable (chmod +x cath-resolve-hits.centos6) and seeing whether you can run it (./cath-resolve-hits.centos6 -h). That version only requires GLIBC_2.4 so shouldn't cause your original problem.

If you have further similar library errors with the libc or libstdc++, it may be worth trying your module load gcc command (and possibly also setting your LD_LIBRARY_PATH environment variable to include any relevant library directories).

[tonyelewis]

I'll assume that this issue is resolved by my previous response and so will close it.

Please reopen if you require further assistance.