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UCLouvain-CBIO / depmap

Cancer Dependency Map package
https://uclouvain-cbio.github.io/depmap/
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definition of "co-dependent genes" #67

Closed Shicheng-Guo closed 2 years ago

Shicheng-Guo commented 2 years ago

I am wondering whether expression, CNV are included in "co-dependent genes" estimation.

The DepMap portal website (https://depmap.org/portal) provides a range of information for each gene, cell lines and lineage dependent on the gene, and co-dependent genes (i.e., other genes whose dependency scores are highly correlated with the gene) as well as basal transcriptome, copy numbers, and mutations of the gene.

Thanks. Shicheng

lgatto commented 2 years ago

Please refer to the depmap portal help forum for questions relating to their data and only use this repository for questions related to the Bioconductor package.