`depmap_drug_sensitivity()` throwing a 404

[j-andrews7]

Seems this data was removed?

depmap::depmap_drug_sensitivity()
snapshotDate(): 2022-04-26
see ?depmap and browseVignettes('depmap') for documentation
downloading 1 resources
retrieving 1 resource
  |=============================================================================================================| 100%

Error: failed to load resource
  name: EH7530
  title: drug_sensitivity_21Q2
  reason: 1 resources failed to download
In addition: Warning messages:
1: download failed
  web resource path: ‘https://experimenthub.bioconductor.org/fetch/7580’
  local file path: ‘C:\Users\jandrews\AppData\Local/R/cache/R/ExperimentHub/589c4ad59f5_7580’
  reason: Not Found (HTTP 404). 
2: bfcadd() failed; resource removed
  rid: BFC33
  fpath: ‘https://experimenthub.bioconductor.org/fetch/7580’
  reason: download failed 
3: download failed
  hub path: ‘https://experimenthub.bioconductor.org/fetch/7580’
  cache resource: ‘EH7530 : 7580’
  reason: bfcadd() failed; see warnings() 

[j-andrews7]

Seems a mismatch between the EHub ID that's provided to fetch (7580) and the actual one(7530). I assume this is on the EH/data upload side somewhere, as trying to fetch with ExperimentHub directly throws the same error (eh[[7530]]).

[tfkillian]

@j-andrews7 I also observe this error. This may be do to a miscommunication with the EH staff that this dataset was an update of an earlier release. I will resubmit this dataset to EH with the name depmap_drug_sensitivity_22Q1 which should solve the issue.

[lshep]

drug_sensativity_21Q2.rda was uploaded while the metadata provided is drug_sensitivity_21Q2. So there is a name mismatch. Working with @tfkillian to have it resolved.

[tfkillian]

@lshep The original metadata that I submitted or this release has drug_sensitivity_21Q2 in all instances: https://github.com/UCLouvain-CBIO/depmap/blob/master/inst/extdata/metadata_22Q1.csv I have re-uploaded the file with the name drug_sensitivity_21Q2.rda via azcopy. If this fixes the issue, please delete all EH references to drug_sensitivity_22Q1.

[lshep]

This should be resolved. Please try downloading again

[j-andrews7]

Thanks for the quick fix!