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UCLouvain-CBIO / depmap

Cancer Dependency Map package
https://uclouvain-cbio.github.io/depmap/
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PRISM secondary screen? #86

Open mschubert opened 1 year ago

mschubert commented 1 year ago

According to the DepMap PRISM repurposing page:

The primary PRISM Repurposing dataset contains the results of pooled-cell line chemical-perturbation viability screens for 4,518 compounds screened against 578 or 562 cell lines.

The secondary PRISM Repurposing dataset contains the results of pooled-cell line chemical-perturbation viability screens for 1,448 compounds screened against 499 cell lines in a 8-step, 4-fold dilution, starting from 10μM.

However, when I look at the drug sensitivity function, it only mentions the primary screen.

Is there a reason the secondary screen is not included in this package?

lgatto commented 1 year ago

@tfkillian should be able to help here.