Error: package or namespace load failed for ‘depmap’ ... error: ‘crispr_22Q1’ not found in ExperimentHub

[felixm3]

Hello!

Running:

library(depmap)

gives me the following error:

Error: package or namespace load failed for ‘depmap’:
 .onLoad failed in loadNamespace() for 'depmap', details:
  call: FUN(X[[i]], ...)
  error: ‘crispr_22Q1’ not found in ExperimentHub

However, when I do:

library(ExperimentHub)
eh <- ExperimentHub()
query(eh, "crispr_22Q1")

I get:

ExperimentHub with 1 record
# snapshotDate(): 2023-10-24
# names(): EH7523
# package(): depmap
# $dataprovider: Broad Institute
# $species: Homo sapiens
# $rdataclass: tibble
# $rdatadateadded: 2022-04-26
# $title: crispr_22Q1
# $description: (CERES) Batch and off-target corrected CRISPR-Cas9 gene, knockdout dependency data for 17386 genes, 1070 cell line...
# $taxonomyid: 9606
# $genome: 
# $sourcetype: CSV
# $sourceurl: https://ndownloader.figshare.com/files/34008491
# $sourcesize: NA
# $tags: c("AssayDomainData", "BreastCancerData", "CancerData", "CellCulture", "ColonCancerData",
#   "CopyNumberVariationData", "DiseaseModel", "ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData,
#   AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData,
#   KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData,
#   Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue", "Genome",
#   "Homo_sapiens_Data", "KidneyCancerData", "LeukemiaCancerData", "LungCancerData", "OrganismData", "OvarianCancerData",
#   "ProstateCancerData", "Proteome", "RepositoryData", "ReproducibleResearch", "StemCell", "Tissue") 
# retrieve record with 'object[["EH7523"]]'

meaning crispr_22Q1 is in ExperimentHub.

Kindly assist.

[lgatto]

What is your sessionInfo()?

[felixm3]

Interestingly, when I went home and tried this, it worked without issue.

But at work I get the same message.

It appears to have something to do with my network connection here so I'll contact my IT department to troubleshoot.

Thank you for the quick response though! 😃