Continous integration - Githubissues

UCLouvain-CBIO / scp

Single cell proteomics data processing

https://uclouvain-cbio.github.io/scp/index.html

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Continous integration #1

Closed lgatto closed 4 years ago

lgatto commented 4 years ago

Use github actions to automatically (1) check each push, (2) build the package down webpage and (3) run code coverage.

See the Spectra package and biocthis for examples.

lgatto commented 4 years ago

Done - see commit e4ed281ddc1636c924b6cc665c321c356bcbfa0f

lgatto commented 4 years ago

The issue seems to be that MsCoreUtils is installed from Bioconductor (release) rather form github, thus getting the wrong version. Will need to switch to Bioc devel.

lgatto commented 4 years ago

GHA are now in place. Current issues still are

Needed to install UCLouvain/QFeatures manually, as apparently the remote is ignored
~Fail on Windows and MacOS due to failing installation of QFeatures~ (fixed with second manual installation of QFeatures)

cvanderaa commented 4 years ago

I see that QFeatures is imported in both the Remotes and in the Depends fields of the DESCRIPTION file. Could that be causing the issue?

lgatto commented 4 years ago

I don't think so - the former informs where to get the package and the latter informs about the dependency status.