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UCLouvain-CBIO / scp

Single cell proteomics data processing
https://uclouvain-cbio.github.io/scp/index.html
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Minor: aggregatefeaturesoverassays #27

Closed edemmott closed 3 years ago

edemmott commented 3 years ago

The fcol name given in the vignette is non-standard for maxquant and doesn't work without renaming. A suitable alternative is 'Sequence' or 'Modified.sequence' as below.

scp <- aggregateFeaturesOverAssays(scp, i = 1:100, fcol = "Modified.sequence", # Note change from 'peptide' name = paste0("peptides_", names(scp)), fun = matrixStats::colMedians, na.rm = TRUE)

cvanderaa commented 3 years ago

Again, thanks for the remark! This has been adapted!