Improve the readSCP vignette

UCLouvain-CBIO / scp

Single cell proteomics data processing

https://uclouvain-cbio.github.io/scp/index.html

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Improve the readSCP vignette #32

Closed cvanderaa closed 2 years ago

cvanderaa commented 2 years ago

Following the SCP2021 presentation, rename some of the vocabulary used (eg feature data -> input table) and redraw some of the figures.

cvanderaa commented 2 years ago

Done since https://github.com/UCLouvain-CBIO/scp/commit/8b1c4e34ea637f6c897501a7183226437e1fbfa1, however, there is a strange build issue since then. I'll try to fix that before closing the issue.

cvanderaa commented 2 years ago

Current message is

Warning in read.dcf(desc, fields = "Package") :
  cannot open compressed file '/__w/scp/scp/check/scp_1.5.1.tar.gz/DESCRIPTION', probable reason 'Not a directory'
Error in read.dcf(desc, fields = "Package") : cannot open the connection
Calls: <Anonymous> -> .get_package_name -> read.dcf
Execution halted
Error: Process completed with exit code 1.

That does not look like an `scp' related error...

lgatto commented 2 years ago

I see the same on other repos. I suspect some external reason.

lgatto commented 2 years ago

Fixed now. Closing this issue.