UCLouvain-CBIO / scp

Single cell proteomics data processing
https://uclouvain-cbio.github.io/scp/index.html
19 stars 2 forks source link

feat: function to create a QFeatures object from DIANN output #42

Closed cvanderaa closed 3 months ago

cvanderaa commented 1 year ago

I moved readSCPfromDIANN() from the SCP.replication repo to the scp packages.

Upon request (see https://github.com/UCLouvain-CBIO/SCP.replication/issues/23), I also added an argument ecol to select the column that contains the quantitative information.

I still need to perform the following tasks before considering this issue solved:

cvanderaa commented 1 year ago

@KristinaGomoryova, you can play with the new argument after installing the development version of scp:

BiocManager::install(UCLouvain-CBIO/scp)
library(scp)
?readSCPfromDIANN
KristinaGomoryova commented 1 year ago

Thanks a lot, I'll try it right away!

cvanderaa commented 3 months ago

This issue is now solved in QFeatures since https://github.com/rformassspectrometry/QFeatures/commit/c895bbc0ed7be1db22dfaa78bef33bd85607933c and propagated to scp since bca81626bce93daadba55d846aae60ce4f0a7dfe