New scpdata sets

[lgatto]

• [ ] Correlated gene modules uncovered by high-precision single-cell transcriptomics
• [x] Dynamics of single-cell protein covariation during epithelial–mesenchymal transition
• [x] Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition
• [ ] Label-Free Profiling of up to 200 Single-Cell Proteomes per Day Using a Dual-Column Nanoflow Liquid Chromatography Platform

[lgatto]

• [x] Evaluating the capabilities of the Astral mass analyzer for single-cell proteomics
• [x] Standardised workflow for mass spectrometry-based single-cell proteomics data processing and analysis using the scp package
• [ ] Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications
• [x] Dynamics of single-cell protein covariation during epithelial–mesenchymal transition

[cvanderaa]

• [x] (see https://github.com/UCLouvain-CBIO/scpdata/pull/22 - assigned to @cvanderaa) TDP-43-stratified single-cell proteomics of postmortem human spinal motor neurons reveals protein dynamics in amyotrophic lateral sclerosis

[cvanderaa]

• [ ] Robust dimethyl-based multiplex-DIA doubles single-cell proteome depth via a reference channel: interesting because DIA with 5-plex (dimethyl-based) strategy and it's LFQ with >400 cells, but all HeLa with no a priori biological variable (maybe screen for cell cycle?).