amilworks
commented
4 years ago Attempt I
Upgrade Version: TurboGears2==2.2.0
I updated Turbogears --> 2.2 and held all other packages at the same version. I also modified bqcore/setup.py to reflect the updated TG2 version TurboGears2>=2.1.5, then built a new image. This was all done using the Python 2.7 version of BisQue to eliminate any issues related to the Python 3 upgrade. Everything built successfully, but now I think we need to update WebOB. Here are the attached logs.
amil@lambda-quad:~/module-dev-bisque$ docker run -it amilworks/bisque05-caffe-xenial:flour-tg2.2
+ CMD=bootstrap
+ shift
+ INDEX=https://biodev.ece.ucsb.edu/py/bisque/xenial/+simple
+ CONFIG=./config/site.cfg
+ export PIP_INDEX_URL=https://biodev.ece.ucsb.edu/py/bisque/xenial/+simple
+ PIP_INDEX_URL=https://biodev.ece.ucsb.edu/py/bisque/xenial/+simple
++ pwd
+ reports=/source/reports/
+ BUILD=/builder/
+ BQHOME=/source/
+ VENV=/usr/lib/bisque
+ '[' '!' -d /source/reports/ ']'
++ pwd
+ echo 'In ' /source 'BISQUE in' /source/ 'Reports in' /source/reports/
In /source BISQUE in /source/ Reports in /source/reports/
+ cd /source/
+ '[' bootstrap = build ']'
+ source /usr/lib/bisque/bin/activate
++ deactivate nondestructive
++ unset -f pydoc
++ '[' -z '' ']'
++ '[' -z '' ']'
++ '[' -n /bin/bash ']'
++ hash -r
++ '[' -z '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/usr/lib/bisque
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/usr/lib/bisque/bin:/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -z '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ '[' x '!=' x ']'
+++ basename /usr/lib/bisque
++ PS1='(bisque) '
++ export PS1
++ alias pydoc
++ '[' -n /bin/bash ']'
++ hash -r
+ '[' bootstrap = bootstrap ']'
+ echo BOOTSTRAPPING
BOOTSTRAPPING
+ umask 0002
+ ls -l
total 120
drwxrwxr-x 1 root root 4096 Oct 19 20:54 bqapi
drwxrwxr-x 1 root root 4096 Oct 19 20:54 bqcore
drwxrwxr-x 1 root root 4096 Oct 19 20:54 bqengine
drwxrwxr-x 1 root root 4096 Oct 19 20:55 bqfeature
drwxrwxr-x 1 root root 4096 Oct 19 20:55 bqserver
drwxrwxr-x 3 root root 4096 Sep 15 00:53 config-defaults
drwxrwxr-x 29 root root 4096 Sep 15 00:53 contrib
-rw-rw-r-- 1 root root 3124 Sep 15 00:53 COPYRIGHT
-rw-rw-r-- 1 root root 1957 Sep 15 00:53 LICENSE
drwxrwxr-x 3 root root 4096 Sep 15 00:53 migrations
drwxr-xr-x 43 root root 4096 Oct 19 20:55 modules
-rw-rw-r-- 1 root root 9917 Sep 15 00:53 pavement.py
-rw-rw-r-- 1 root root 43589 Sep 15 00:53 paver-minilib.zip
drwxrwxr-x 2 root root 4096 Sep 15 00:53 pytest-bisque
-rw-rw-r-- 1 root root 187 Sep 15 00:53 pytest.ini
drwxr-xr-x 2 root root 4096 Oct 19 20:54 reports
-rw-rw-r-- 1 root root 2686 Oct 19 20:50 requirements.txt
-rw-rw-r-- 1 root root 225 Sep 15 00:53 setup.py
+ '[' -d /builder/boot-scripts.d ']'
+ ls -l /builder/boot-scripts.d
total 4
-rwxrwxr-x 1 root root 47 Sep 15 00:53 B10-fullconfig.sh
+ for f in '${BUILD}boot-scripts.d/B*.sh'
+ echo 'Executing **BOOT /builder/boot-scripts.d/B10-fullconfig.sh **'
Executing **BOOT /builder/boot-scripts.d/B10-fullconfig.sh **
+ '[' -f /builder/boot-scripts.d/B10-fullconfig.sh ']'
+ bash /builder/boot-scripts.d/B10-fullconfig.sh
+ bq-admin setup -y fullconfig
Traceback (most recent call last):
File "/usr/lib/bisque/bin/bq-admin", line 6, in <module>
from pkg_resources import load_entry_point
File "/usr/lib/bisque/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3036, in <module>
@_call_aside
File "/usr/lib/bisque/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3020, in _call_aside
f(*args, **kwargs)
File "/usr/lib/bisque/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 3049, in _initialize_master_working_set
working_set = WorkingSet._build_master()
File "/usr/lib/bisque/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 656, in _build_master
return cls._build_from_requirements(__requires__)
File "/usr/lib/bisque/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 669, in _build_from_requirements
dists = ws.resolve(reqs, Environment())
File "/usr/lib/bisque/local/lib/python2.7/site-packages/pkg_resources/__init__.py", line 859, in resolve
raise VersionConflict(dist, req).with_context(dependent_req)
pkg_resources.ContextualVersionConflict: (WebOb 1.0.8 (/usr/lib/bisque/lib/python2.7/site-packages), Requirement.parse('WebOb==1.1.1'), set(['TurboGears2']))
+ CMD=start
+ shift
+ '[' start = pylint ']'
+ '[' start = unit-tests ']'
+ '[' start = function-tests ']'
+ '[' start = start ']'
+ '[' '!' -f config/site.cfg ']'
+ echo 'Please run bootstrap first i.e. bootstrap start'
Please run bootstrap first i.e. bootstrap start
+ exit 1
TurboGears 2.2.0
As a first step in the upgrade process, we will shoot for incremental upgrades of TG2 and document any issues faced.
Current Version:
TurboGears2==2.1.5Upgrade Version:TurboGears2==2.2.0Post Upgrade
Use this issue to document any issues you faced during the upgrade process. Log dumps can be thrown here as well. Try to use the code syntax for large blocks of code so we can easily read through it. Otherwise, go crazy.