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UCSC-LoweLab / tRAX

tRNA Analysis of eXpression
GNU General Public License v3.0
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Processsamples.py error #17

Closed sg4640 closed 2 years ago

sg4640 commented 3 years ago

Hi, I'm getting this error message when running the third step of the tRAX pipeline. I also got this type of error when running the TestRun.bash script, so it can't just be my input files. Has anyone else had this issue? Bit of a newbie to tRNA analysis and these sort of pipelines.

Screen Shot 2021-04-26 at 2 12 24 PM
andrewdholmes commented 3 years ago

It looks like the tRNA database creation failed, did that produce any error messages?

On Mon, Apr 26, 2021 at 11:15 AM sg4640 @.***> wrote:

Hi, I'm getting this error message when running the third step of the tRAX pipeline. I also got this type of error when running the TestRun.bash script, so it can't just be my input files. Has anyone else had this issue? Bit of a newbie to tRNA analysis and these sort of pipelines. [image: Screen Shot 2021-04-26 at 2 12 24 PM] https://user-images.githubusercontent.com/68067388/116130708-8b2b2600-a699-11eb-8d9b-0618b63152c0.png

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sg4640 commented 3 years ago

This is from the test data that comes with the package. I got this error:

Screen Shot 2021-04-27 at 1 56 15 PM
andrewdholmes commented 3 years ago

OK not sure but it looks like bowtie2-build failed due to a lack of memory on your machine, if you're running it on a laptop you might need to move this to a server

On Tue, Apr 27, 2021 at 10:58 AM sg4640 @.***> wrote:

This is from the test data that comes with the package. I got this error: [image: Screen Shot 2021-04-27 at 1 56 15 PM] https://user-images.githubusercontent.com/68067388/116289378-6f3e8780-a760-11eb-8f98-4222b08d1121.png

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sg4640 commented 3 years ago

Thanks! I'll try that and let you know if I run into any other issues