search

UCSC-LoweLab / tRAX

tRNA Analysis of eXpression
GNU General Public License v3.0
9 stars 5 forks source link

Rat mitotRNAs #20

Open sr8510 opened 2 years ago

sr8510 commented 2 years ago

Hi,

I was able to run tRAX with human and rat samples and got good results. However, I need to analyze rat mito tRNAs but quickdb.bash has only human and mouse mitotRNA databases. It`s a bit tricky to get mito tRNA files for rat from the mito tRNA database and to generate the alignment myself. Can you please advise on how to prepare it or do you plan to put the rat mito tRNA database as part of the quickdb.bash downloadables?

Thanks!

patriciaplchan commented 2 years ago

We will put in our todo list to add rat mt-tRNA data.