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UCSC-LoweLab / tRNAscan-SE

A program for detection of tRNA genes
GNU General Public License v3.0
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plant mitochondria model #17

Closed zmz1988 closed 1 year ago

zmz1988 commented 1 year ago

Hello, thank you so much for providing this easy-to-use tool! I read in the paper that now the mitochondria tRNA search model is only available for mammals and vertebrates. May I ask how could we search for the plant mitochondria tRNA sequences from genome sequence? If the study species is a model species, could we have the possibility to feed in the model species tRNA sequence to scan? Thanks!

patriciaplchan commented 1 year ago

You can use the option for organellar tRNAs to search plant mitochondrial genomes. In the standalone software, the option is -O. For using the web server version (http://trna.ucsc.edu/tRNAscan-SE/), set the sequence source as Other mitochondrial.

zmz1988 commented 1 year ago

Thanks! That's very helpful!