minjinhan
commented
3 years ago The problem have been solved by tRNAscan-SE source installation.
Closed minjinhan closed 3 years ago
minjinhan
commented
3 years ago The problem have been solved by tRNAscan-SE source installation.
Hello I try to run tRNAscan-SE to identify tRNA from the genome , the commad as follow:
tRNAscan-SE -L -o trnascan-se.out -f trna_structure -a trnaseq.fasta -m trnascan-se.state Genome.fasta
After running, we got following information. Can you supply suggestions to solve this problem? Thanks!
sh: line 1: 52424 Aborted (core dumped) /miniconda3/bin/trnascan-1.4 -i 1 -c -s /tmp/tscan52417.fa > /tmp/tscan52417.raw tRNAscan could not complete successfully for Chr1. Possible memory allocation problem or missing file. (Exit code=34304).
buffer overflow detected : /miniconda3/bin/trnascan-1.4 terminated ======= Backtrace: ========= /lib64/libc.so.6(__fortify_fail+0x37)[0x7f44e5872877] /lib64/libc.so.6(+0x3c01700760)[0x7f44e5870760] miniconda3/bin/trnascan-1.4(+0x241b)[0x55b54028741b] /lib64/libc.so.6(__libc_start_main+0x100)[0x7f44e578ed20] /miniconda3/bin/trnascan-1.4(+0x2de5)[0x55b540287de5] ======= Memory map: ======== 55b540285000-55b540287000 r--p 00000000 00:17 130025049 /miniconda3/bin/trnascan-1.4 55b540287000-55b54028a000 r-xp 00002000 00:17 130025049 /miniconda3/bin/trnascan-1.4 55b54028a000-55b54028c000 r--p 00005000 00:17 130025049 /miniconda3/bin/trnascan-1.4 55b54028c000-55b54028d000 r--p 00006000 00:17 130025049 /miniconda3/bin/trnascan-1.4 55b54028d000-55b54028e000 rw-p 00007000 00:17 130025049 /miniconda3/bin/trnascan-1.4 55b5416d0000-55b5416f1000 rw-p 00000000 00:00 0 [heap] 7f44e5770000-7f44e58fb000 r-xp 00000000 08:03 19923019 /lib64/libc-2.12.so 7f44e58fb000-7f44e5afa000 ---p 0018b000 08:03 19923019 /lib64/libc-2.12.so 7f44e5afa000-7f44e5afe000 r--p 0018a000 08:03 19923019 /lib64/libc-2.12.so 7f44e5afe000-7f44e5b00000 rw-p 0018e000 08:03 19923019 /lib64/libc-2.12.so 7f44e5b00000-7f44e5b04000 rw-p 00000000 00:00 0 7f44e5b04000-7f44e5b24000 r-xp 00000000 08:03 19922994 /lib64/ld-2.12.so 7f44e5cf8000-7f44e5cfb000 r--p 00000000 00:17 190972086 /miniconda3/lib/libgcc_s.so.1 7f44e5cfb000-7f44e5d07000 r-xp 00003000 00:17 190972086 /miniconda3/lib/libgcc_s.so.1 7f44e5d07000-7f44e5d0a000 r--p 0000f000 00:17 190972086 /miniconda3/lib/libgcc_s.so.1 7f44e5d0a000-7f44e5d0b000 r--p 00011000 00:17 190972086 /miniconda3/lib/libgcc_s.so.1 7f44e5d0b000-7f44e5d0c000 rw-p 00012000 00:17 190972086 /miniconda3/lib/libgcc_s.so.1 7f44e5d0c000-7f44e5d0f000 rw-p 00000000 00:00 0 7f44e5d22000-7f44e5d24000 rw-p 00000000 00:00 0 7f44e5d24000-7f44e5d25000 r--p 00020000 08:03 19922994 /lib64/ld-2.12.so 7f44e5d25000-7f44e5d26000 rw-p 00021000 08:03 19922994 /lib64/ld-2.12.so 7f44e5d26000-7f44e5d27000 rw-p 00000000 00:00 0 7fffc865d000-7fffc8674000 rw-p 00000000 00:00 0 [stack] 7fffc87d2000-7fffc87d3000 r-xp 00000000 00:00 0 [vdso] ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]