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UCSC-MedBook / MedBook-Wrangler

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Show deduplicate gene count in genomic upload #9

Open mokolodi1 opened 8 years ago

mokolodi1 commented 8 years ago

Should show: XXX genes (XXX before duplicate removal)

e-t-k commented 8 years ago

In current view, Gene Count : XXX , the original count including duplicates is XXX. So new view will be Gene Count YYY genes (ZZZ duplicates were [removed? merged])

Teo, what happens if there are two genes with conflicting expression levels?

mokolodi1 commented 8 years ago

The duplicated values will be averaged: https://github.com/UCSC-MedBook/wrangler-collections/blob/master/fileHandlers/RectangularGeneExpression.js#L79

On Mon, Jul 11, 2016 at 2:59 PM, e-t-k notifications@github.com wrote:

In current view, Gene Count : XXX , the original count including duplicates is XXX. So new view will be Gene Count YYY genes (ZZZ duplicates were [removed? merged])

Teo, what happens if there are two genes with conflicting expression levels?

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