Develop - Githubissues

UCSC-Treehouse / pipelines

Makefiles to run dockerized pipelines used in Treehouse on a single sample

Apache License 2.0

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Develop #10

Closed rcurrie closed 6 years ago

rcurrie commented 6 years ago

Makefile:

Improved R1/R2 Regex that looks from the right for the first '1' or '2'
Fix mis-named tar contents for verify
map tmp into umend so we don't run out of disk space
Switch to umend as separate step

Fabric

Integrate grooming as well as fastq concatenation
Experimental CEPH/S3 support