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UCSC-Treehouse / pipelines

Makefiles to run dockerized pipelines used in Treehouse on a single sample
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prune counts.jf from jfkm output before download #28

Closed e-t-k closed 5 years ago

e-t-k commented 5 years ago

I've noticed a file counts.jf that is generated from jfkm and is 2-3 gb in size.

@jpfeil confirms that this is a jellyfish file containing kmers (but not sequence data) and that it is currently not being used for any analysis, so it is ok to prune and can be re-generated when necessary.

so : update the fabfile to prune similar to generated bam files before download to save on transfer time / storage space.