UCSC-Treehouse / pipelines

Makefiles to run dockerized pipelines used in Treehouse on a single sample
Apache License 2.0
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pizzly crashes when run directly from Makefile #34

Open e-t-k opened 5 years ago

e-t-k commented 5 years ago

Running "make pizzly" crashes because it requires the expression/Kallisto outputs files, which are not unzipped by default from the Makefile.

For now I've removed pizzly from make all as its output is lower priority; if you want the output, unzip the TGZ generated by expression so that there is an expression/Kallisto folder before make pizzly.

This doesn't affect fab-wrapped runs as the Fabfile unzips the expression output as part of its process.