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UCSC-Treehouse / pipelines

Makefiles to run dockerized pipelines used in Treehouse on a single sample
Apache License 2.0
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Pipeline does not support expanded FASTQ files, only gzipped #37

Open e-t-k opened 1 year ago

e-t-k commented 1 year ago

see https://github.com/UCSC-Treehouse/pipelines/blob/master/fabfile.py#L202 _put_primary -- it will completely ignore .fastq and search only for .fastq.gz or .fq.gz