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UCSD-E4E / fishsense-lite

CLI for processing data from the FishSense Lite platform
https://e4e.ucsd.edu/fishsense
BSD 3-Clause "New" or "Revised" License
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`poetry install` fail on Ubuntu 24.04 #15

Open ntlhui opened 4 days ago

ntlhui commented 4 days ago 
    === Detected probe priority based on environment vars: pkg_config: false, cmake: false, vcpkg: false
    === Probing the OpenCV library in the following order: environment, pkg_config, cmake, vcpkg_cmake, vcpkg
    === Can't probe using: environment, continuing with other methods because: Some environment variables are missing
    === Probing OpenCV library using pkg_config
    === Can't probe using: pkg_config, continuing with other methods because: 
    pkg-config exited with status code 1
    > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --libs --cflags opencv4

    The system library `opencv4` required by crate `opencv` was not found.
    The file `opencv4.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory.
    The PKG_CONFIG_PATH environment variable is not set.

    HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `opencv4.pc`.
    , 
    pkg-config exited with status code 1
    > PKG_CONFIG_ALLOW_SYSTEM_LIBS=1 PKG_CONFIG_ALLOW_SYSTEM_CFLAGS=1 pkg-config --libs --cflags opencv

    The system library `opencv` required by crate `opencv` was not found.
    The file `opencv.pc` needs to be installed and the PKG_CONFIG_PATH environment variable must contain its parent directory.
    The PKG_CONFIG_PATH environment variable is not set.

    HINT: if you have installed the library, try setting PKG_CONFIG_PATH to the directory containing `opencv.pc`.

    === Probing OpenCV library using cmake
    === cmake ninja probe command: cd "/home/dronelab/workspace/e4e/fishsense/fishsense-lite/.venv/src/pyFishSense/target/release/build/opencv-9e628af0e7e68dfe/out/cmake_probe_build" && "cmake" "-S" "/home/dronelab/.cargo/registry/src/index.crates.io-6f17d22bba15001f/opencv-0.91.3/cmake" "-DOCVRS_PACKAGE_NAME=OpenCV" "-DCMAKE_BUILD_TYPE=Release" "-G" "Ninja"
    === Probing with cmake ninja generator failed, will try Makefile generator, error: cmake returned an error
        stdout: "-- Configuring incomplete, errors occurred!\n"
        stderr: "CMake Error: CMake was unable to find a build program corresponding to \"Ninja\".  CMAKE_MAKE_PROGRAM is not set.  You probably need to select a different build tool.\nCMake Error: CMAKE_C_COMPILER not set, after EnableLanguage\nCMake Error: CMAKE_CXX_COMPILER not set, after EnableLanguage\n"
    === cmake makefiles probe command: cd "/home/dronelab/workspace/e4e/fishsense/fishsense-lite/.venv/src/pyFishSense/target/release/build/opencv-9e628af0e7e68dfe/out/cmake_probe_build" && "cmake" "-S" "/home/dronelab/.cargo/registry/src/index.crates.io-6f17d22bba15001f/opencv-0.91.3/cmake" "-DOCVRS_PACKAGE_NAME=OpenCV" "-DCMAKE_BUILD_TYPE=Release" "-G" "Unix Makefiles"
    === Probing with cmake Makefile generator failed, will try deprecated find_package, error: cmake returned an error
        stdout: "-- The C compiler identification is GNU 13.2.0\n-- The CXX compiler identification is GNU 13.2.0\n-- Detecting C compiler ABI info\n-- Detecting C compiler ABI info - done\n-- Check for working C compiler: /usr/bin/cc - skipped\n-- Detecting C compile features\n-- Detecting C compile features - done\n-- Detecting CXX compiler ABI info\n-- Detecting CXX compiler ABI info - done\n-- Check for working CXX compiler: /usr/bin/c++ - skipped\n-- Detecting CXX compile features\n-- Detecting CXX compile features - done\n-- Configuring incomplete, errors occurred!\n"
        stderr: "CMake Error at CMakeLists.txt:5 (find_package):\n  By not providing \"FindOpenCV.cmake\" in CMAKE_MODULE_PATH this project has\n  asked CMake to find a package configuration file provided by \"OpenCV\", but\n  CMake did not find one.\n\n  Could not find a package configuration file provided by \"OpenCV\" with any\n  of the following names:\n\n    OpenCVConfig.cmake\n    opencv-config.cmake\n\n  Add the installation prefix of \"OpenCV\" to CMAKE_PREFIX_PATH or set\n  \"OpenCV_DIR\" to a directory containing one of the above files.  If \"OpenCV\"\n  provides a separate development package or SDK, be sure it has been\n  installed.\n\n\n"
    === cmake find-package compile probe command: cd "/home/dronelab/workspace/e4e/fishsense/fishsense-lite/.venv/src/pyFishSense/target/release/build/opencv-9e628af0e7e68dfe/out/cmake_probe_build" && "cmake" "-S" "/home/dronelab/.cargo/registry/src/index.crates.io-6f17d22bba15001f/opencv-0.91.3/cmake" "-DOCVRS_PACKAGE_NAME=OpenCV" "-DCMAKE_BUILD_TYPE=Release" "--find-package" "-DCOMPILER_ID=GNU" "-DLANGUAGE=CXX" "-DMODE=COMPILE" "-DNAME=OpenCV"
    === Can't probe using: cmake, continuing with other methods because: cmake returned an error
        stdout: "OpenCV not found.\n"
        stderr: "CMake Error: Run 'cmake --help' for all supported options.\n"
    === Probing OpenCV library using vcpkg_cmake
    === Can't probe using: vcpkg_cmake, continuing with other methods because: Could not find Vcpkg tree: No vcpkg installation found. Set the VCPKG_ROOT environment variable or run 'vcpkg integrate install'
    === Probing OpenCV library using vcpkg
    === Can't probe using: vcpkg, continuing with other methods because: Could not find Vcpkg tree: No vcpkg installation found. Set the VCPKG_ROOT environment variable or run 'vcpkg integrate install', Could not find Vcpkg tree: No vcpkg installation found. Set the VCPKG_ROOT environment variable or run 'vcpkg integrate install'
    Error: "Failed to find installed OpenCV package using probes: environment, pkg_config, cmake, vcpkg_cmake, vcpkg, refer to https://github.com/twistedfall/opencv-rust#getting-opencv for help"
  warning: build failed, waiting for other jobs to finish...
  šŸ’„ maturin failed
    Caused by: Failed to build a native library through cargo
    Caused by: Cargo build finished with "exit status: 101": `env -u CARGO PYO3_ENVIRONMENT_SIGNATURE="cpython-3.11-64bit" PYO3_PYTHON="/tmp/tmpultlvbws/.venv/bin/python" PYTHON_SYS_EXECUTABLE="/tmp/tmpultlvbws/.venv/bin/python" "cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/home/dronelab/workspace/e4e/fishsense/fishsense-lite/.venv/src/pyFishSense/Cargo.toml" "--release" "--lib"`
  Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/tmp/tmpultlvbws/.venv/bin/python', '--compatibility', 'off'] returned non-zero exit status 1

  at ~/.pyenv/versions/3.11.9/lib/python3.11/site-packages/poetry/installation/chef.py:164 in _prepare
      160ā”‚ 
      161ā”‚                 error = ChefBuildError("\n\n".join(message_parts))
      162ā”‚ 
      163ā”‚             if error is not None:
    ā†’ 164ā”‚                 raise error from None
      165ā”‚ 
      166ā”‚             return path
      167ā”‚ 
      168ā”‚     def _prepare_sdist(self, archive: Path, destination: Path | None = None) -> Path:
ntlhui commented 4 days ago

apt install libopencv-dev clang libclang-dev resolved this. Fixing in eb7f30991f47a8f9e9c95600757f18d1e5a13707