As of now, there is a single Singularity image (SIF) that gets run when deploying the bulk RNAseq pipeline. This makes it difficult to maintain and update the versions of the tools that are involved in the different process steps.
Instead, it would be better if there was an image (SIF) per tool. This would enable a more modularized format for the pipeline's containerization and deployment.
As of now, there is a single Singularity image (SIF) that gets run when deploying the bulk RNAseq pipeline. This makes it difficult to maintain and update the versions of the tools that are involved in the different process steps.
Instead, it would be better if there was an image (SIF) per tool. This would enable a more modularized format for the pipeline's containerization and deployment.