get working with HTO multiplexed input

UCSF-DSCOLAB / data_processing_pipelines

A repository to store the existing pipelines to process the various CoLabs datasets

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Open erflynn opened 12 months ago

erflynn commented 12 months ago

Will need to change the following:

take the reference HTO .csv as input
run cellranger multi instead of cellranger count, write proper config for this
incorporate HTO assignments into the seurat object (should be able to pull similar to demux outputs?)

Talk to Rebecca, Dan, and Tammie about this