UCSF-DSCOLAB / data_processing_pipelines

A repository to store the existing pipelines to process the various CoLabs datasets

0 stars 1 forks source link

Single cell: Refactor post_qc to use new json config, and some slight refactoring #36

Closed amadeovezz closed 10 months ago

amadeovezz commented 10 months ago

33

erflynn commented 10 months ago

this is great! thanks for doing this. my only concern is that deleting param_2.json and changing param_1.json means there's no example for the pre_fmx_qc and post_fmx_qc pipeline -- could we rename that to param_alt_steps.json or something and keep it so we have it until those are updated.

amadeovezz commented 10 months ago

ooh good catch.

What about this naming convention:

erflynn commented 10 months ago

works for me!