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UCSF-DSCOLAB / data_processing_pipelines

A repository to store the existing pipelines to process the various CoLabs datasets
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Pipeline steps do not run after DEMUXLET #40

Closed amadeovezz closed 10 months ago

amadeovezz commented 10 months ago

If we demutiplex using demuxlet - there is a bug in the channel logic that prevent downstream steps from running.

[a3/cdab94] process > FILTER_BARCODES (6) [100%] 6 of 6 ✔
[e6/4b9109] process > FILTER_BAM (6)      [100%] 6 of 6 ✔
[d1/1e23b9] process > DSC_PILEUP (5)      [100%] 6 of 6 ✔
[92/e7c572] process > MERGE_DSC (3)       [100%] 3 of 3 ✔
[f6/ee5b0e] process > DEMUXLET_POOL (3)   [100%] 3 of 3 ✔
[-        ] process > SEPARATE_DMX        -
[-        ] process > DEMUXLET_LIBRARY    -
[-        ] process > FIND_DOUBLETS       -
[-        ] process > SEURAT_QC           -
Done!