UCSF-DSCOLAB / data_processing_pipelines

A repository to store the existing pipelines to process the various CoLabs datasets
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Seperate out Freemuxlet and Demuxlet into two composable pipelines #49

Open amadeovezz opened 10 months ago

amadeovezz commented 10 months ago

The freemuxlet and demuxlet sections of pre_qc are growing in complexity and are tricky to read and follow. It would be great to abstract this logic away in two separate pipelines. This would help readability of the pre_qc , and allow us to refactor the logic once they are separated out into pipelines.