Get nextflow to submit to specified partition

UCSF-DSCOLAB / data_processing_pipelines

A repository to store the existing pipelines to process the various CoLabs datasets

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Get nextflow to submit to specified partition #50

Open erflynn opened 10 months ago

erflynn commented 10 months ago

Currently this does not work. I have tried process.queue: <partition> and specifying process.ClusterOptions = "--partition=<partition>". This would be extremely useful to leverage freecycle resources. I have tried this with specifying common and it does not work, which means that this is a c4 slurm settings issue rather than a freecycle issue.

erflynn commented 10 months ago

I have posted qs about this in nextflow and c4 slacks but no response. In theory the above commands should work.