WIP: Add VDJ processing capabilities - Githubissues

UCSF-DSCOLAB / data_processing_pipelines

A repository to store the existing pipelines to process the various CoLabs datasets

0 stars 1 forks source link

WIP: Add VDJ processing capabilities #62

Closed erflynn closed 7 months ago

erflynn commented 9 months ago

Moves functionality from ef/add_vdj (on original code base) to refactored code base for the pre_qc step.

A few todos before merging:

[ ] get @amadeovezz 's automated tests running to make sure original functionality is not broken
[ ] finish generating complete VDJ test dataset (currently two parts) and move to general location
[ ] add additional automated tests for VDJ data
[ ] finish pre_fmx_qc and post_fmx_qc step updates
[ ] additional testing on "real" data by @dtm2451 , and adjustment to resource reqs