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UCSF-DSCOLAB / data_processing_pipelines

A repository to store the existing pipelines to process the various CoLabs datasets
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Depooling pipeline does not leverage slurm #73

Open amadeovezz opened 4 months ago

amadeovezz commented 4 months ago

There is currently a bug with the way snakemake interacts with slurm and singularity.

I've added to an issue on the snakemake repo:

https://github.com/snakemake/snakemake/issues/2808

amadeovezz commented 2 months ago

Looks like there was a fix in the snakemake repo!

https://github.com/snakemake/snakemake/issues/2808

Will test this out at some point and confirm it works.