Kernel dies in Jupyter Notebook while trying to plot a map

seizethedata commented 5 years ago

Description of the bug

Kernel dies in Jupiter Notebook when trying to plot a map in example notebook

Network data (optional)

If the issue is related to specific network data please provide a link to download the data or the function used to download the data.

Environment

Operating system: macOS High Sierra v 10.13.6 (17G4015)
Python version: 3.7.0
Pandana version: 0.4.1

Paste the code that reproduces the issue here:

fig_kwargs = {'figsize': [20, 20]}
bmap_kwargs = {'suppress_ticks': False, 'resolution': 'h', 'epsg': '26943'}
plot_kwargs = {'cmap': 'BrBG', 's': 8, 'edgecolor': 'none'}

sf_tmp = [-122.524338, 37.707794, -122.34993, 37.834192]
sf_bbox = [sf_tmp[1], sf_tmp[0], sf_tmp[3], sf_tmp[2]]

net.plot(a[1], bbox=sf_bbox, 
         fig_kwargs=fig_kwargs, bmap_kwargs=bmap_kwargs, plot_kwargs=plot_kwargs)

Paste the error message (if applicable):

Assertion failed: (0), function query, file AbstractSTRtree.cpp, line 293.

sablanchard commented 5 years ago

Thanks for the report @seizethedata to better troubleshoot can you post all the packages and versions you have in your environment?

seizethedata commented 5 years ago

@sablanchard sure, here it is:

appdirs==1.4.3 appnope==0.1.0 asn1crypto==0.24.0 backcall==0.1.0 basemap==1.2.0 beautifulsoup4==4.6.3 bleach==2.1.4 branca==0.3.0 brewer2mpl==1.4.1 bs4==0.0.1 carto==1.3.0 cartoframes==0.7.1 certifi==2018.8.13 cffi==1.11.5 chardet==3.0.4 chroma-py==0.1.0.dev1 click==6.7 click-plugins==1.0.3 cligj==0.4.0 colorlover==0.2.1 colour==0.1.5 cryptography==2.3.1 cufflinks==0.14.6 cycler==0.10.0 Cython==0.28.5 decorator==4.3.0 descartes==1.1.0 entrypoints==0.2.3 Fiona==1.7.13 Flask==1.0.2 folium==0.6.0 future==0.15.2 GeoAlchemy2==0.4.2 geocoder==1.38.1 geographiclib==1.49 geojson==2.4.0 geopandas==0.4.0 geopy==1.16.0 geos==0.2.1 html5lib==1.0.1 idna==2.7 ipykernel==4.8.2 ipyleaflet==0.9.0 ipython==6.5.0 ipython-genutils==0.2.0 ipython-magic-folium==0.0.0 ipywidgets==7.4.0 itsdangerous==0.24 jedi==0.12.1 Jinja2==2.10 jsonschema==2.6.0 jupyter-client==5.2.3 jupyter-core==4.4.0 kiwisolver==1.0.1 lxml==4.2.4 mapboxgl==0.8.0 MarkupSafe==1.0 matplotlib==2.2.3 mistune==0.8.3 munch==2.3.2 nbconvert==5.3.1 nbformat==4.4.0 ndg-httpsclient==0.5.1 networkx==2.1 nose==1.3.7 notebook==5.6.0 numexpr==2.6.9 numpy==1.15.1 osmnet==0.1.5 osmnx==0.8.1 pandana==0.4.1 pandas==0.23.4 pandocfilters==1.4.2 parso==0.3.1 pexpect==4.6.0 pickleshare==0.7.4 Pillow==5.3.0 plotly==3.4.2 postgis==1.0.4 prometheus-client==0.3.1 prompt-toolkit==1.0.15 ptyprocess==0.6.0 pyasn1==0.4.4 pychrone==0.0.3 pycparser==2.18 Pygments==2.2.0 pyOpenSSL==18.0.0 pyparsing==2.2.0 pyproj==1.9.5.1 pyrestcli==0.6.6 PySAL==1.14.4.post2 pyshp==2.0.1 python-dateutil==2.7.3 pytz==2018.5 pyzmq==17.1.2 ratelim==0.1.6 requests==2.19.1 retrying==1.3.3 Rtree==0.8.3 scikit-learn==0.20.2 scipy==1.1.0 seaborn==0.9.0 selenium==3.14.0 Send2Trash==1.5.0 Shapely==1.6.4.post2 simplegeneric==0.8.1 six==1.11.0 SQLAlchemy==1.2.11 tables==3.4.4 terminado==0.8.1 testpath==0.3.1 tornado==5.1 tqdm==4.25.0 traitlets==4.3.2 traittypes==0.2.1 urllib3==1.23 wcwidth==0.1.7 webcolors==1.8.1 webencodings==0.5.1 Werkzeug==0.14.1 widgetsnbextension==3.4.0 xarray==0.10.8 xmltodict==0.11.0

absudabsu commented 5 years ago

Was this ever solved? I am thinking this is an issue with geos ?

UDST / pandana