UIUCSinhaLab / GEMSTAT

Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
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The usenlopt branch throws an error if a starting point has values outside the optimization bounds? #34

Open bryan-lunt opened 7 years ago

bryan-lunt commented 7 years ago

I guess those values should be truncated? Perhaps it should be an option to truncate, with the error behavior serving as the default. If we throw an explicit error, it might help users catch mistakes that might otherwise get silently ignored and corrupt their science.