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UMCUGenetics / MutationalPatterns

R package for extracting and visualizing mutational patterns in base substitution catalogues
MIT License
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Axis lable offsets #52

Closed sternp closed 4 years ago

sternp commented 4 years ago

The axis labels aren't properly centered for a few of the graph commands. I've noticed it for heatmaps on the X axis.

A simple tweak to the ggplot code would make it more user friendly.

Overall, thanks for this pretty neat package!

FreekManders commented 4 years ago

Hi Sternp, thank you for bringing this to our attention. The issue seems to be caused by this: https://github.com/tidyverse/ggplot2/issues/1878

I fixed it in the newest development version by adding vjust = 0.5, to all x-axes with a 90-degree angle. The fix can be found here: https://github.com/FreekManders/MutationalPatterns/commit/de319463ce8b580dff095fc44b30cb9e58381ce1 If you haven't done it already, you could probably add this to your heatmaps to fix them: fig = fig + theme(axis.text.x = element_text(angle = 90, hjust = 1, vjust = 0.5, size = 8)) (Might not work if you use the dendograms).