Prerequisites for running the application

UMEssen / Body-and-Organ-Analysis

BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Composition Analysis, this tool is capable of analyzing medical images and identifying the different structures within the human body, including bones, muscles, organs, and blood vessels.

Apache License 2.0

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Prerequisites for running the application #33

Closed Negar-Shah closed 6 months ago

Negar-Shah commented 6 months ago

Hi everyone,

Thank you for the amazing toolkit. I wanted to ask what are the prerequisites for running the application? Which Docker version, Nvidia driver version, and other toolkits are used?

Best regards, Negar

JannisStraus commented 6 months ago

Hi Negar,

We run BOA on Ubuntu 22.04.4 LTS with Nvidia Driver version 525.147.05, CUDA version 12.0 and Docker version 25.0.3. The Nvidia Driver and CUDA versions primary depend on the GPUs you are using. We use a GPU Cluster with multiple GPUs so you may need different versions. You can find the correct Nvidia Driver on https://www.nvidia.com/Download/index.aspx?lang=en-us and the compatible CUDA version on https://developer.nvidia.com/cuda-toolkit-archive. I hope that I could help you.

Best regards, Jannis

Negar-Shah commented 6 months ago

Thank you Jannis for your fast reply. I am now encountering another issue, for which I will create a new issue.

Best regards, Negar